BioSharing Registry: connecting data policies, standards & databases in life sciences WG

WG

Group details

Status: 
Secretariat Liaison: 
Lynn Yarmey
TAB Liaison: 
Paul Uhlir
Case Statement: 
 

FAIRsharing Logo

**Breaking News**

We have rebranded the BioSharing.org registry to FAIRsharing.org in response to user feedback, suggestions from members of the advisory board, but also from existing and prospective adopters.


Page Contents

  • WG aims
  • Introducing FAIRsharing
  • Our Adopters (to date)
  • Key outputs
  • Activities at previous plenaries (with links to slides)
  • Events we have attended and presented at (with links to slides)


  • RDA Plenary 10, Montreal, Canada, 17th-21st September

    As the RDA 10th Plenary meeting (Montrèal, Canada) programme is now live, we thought it would be a good time to highlight when the BioSharing WG co-chairs will be presenting FAIRsharing.org and/or discussing our work in the BioSharing WG.


    Sunday 17th September

    - 09:00-18:00 Interest Group on Agricultural Data (IGAD) Pre-Plenary meeting (Day 1) - talk at 10:15 - Slides

    Monday 18th September

    - 09:00-18:00 Interest Group on Agricultural Data (IGAD) Pre-Plenary meeting (Day 2)

    - 14:00-18:00 RDA TAB & WG/IG Chairs meeting

    Tuesday 19th September

    - 11:30-13:00 Interest Group Data Discovery Paradigms

    - 14:00-15:30 Interest Group Mapping the landscape

    - 16:00-17:30 Joint WG BioSharing, IG ELIXIR Bridging Force - Slides

    Wednesday 20th September

    - 11:00-12:30 BoF Test Bed

    - 13:30-15:00 Joint IG Active Data Management Plans, IG Domain Repositories

    Thursday 21st September

    - 11:00-12:30 Working Group Data Fitness



    The outputs of this WG will be:

    1. a set of recommendations to guide users and producers of databases and content standards to select and describe them, or recommend them in data policies; and
    2. a curated registry, which enacts the recommendations and assists a variety of end users, providing well described, interlinked, and cross-searchable records on content standards, databases and data policies.

    The recommendation detailing the WG output is available here - http://dx.doi.org/10.15497/RDA00017

    This output is ready for community review. Please take a look and add any comments and questions you may have.


    The intended target of these outputs are stakeholders in all sectors, producing and using databases, content standards and data policies, and who are involved in managing, serving, curating, preserving, publishing or regulating data and/or other digital objects, in particular datasets. Whether they are researchers, standard/database developers, funders, journal editors, librarians or data managers, the outputs from the BioSharing WG aim to enable end users to understand which standards and databases are mature and appropriate to their use case. By mapping the relationships between standards and the databases that implement them, or the policies that recommend them, the BioSharing registry enables them to make an informed decision as to which standard or database to use or endorse.




    FAIRsharing Logo

    **Breaking News**

    We have rebranded the BioSharing.org registry to FAIRsharing.org in response to user feedback, suggestions from members of the advisory board, but also from existing and prospective adopters. The broader name also reflects the fact that the portal has always encompassed standards that are generic (and therefore applicable to all disciplines) and others that are outside bio and life sciences. The FAIRsharing site is now live - https://www.fairsharing.org. All links to BioSharing or records in BioSharing will automatically redirect to the new site.


    This use cases-driven WG is a joint effort with Force11 and it is led and constituted by prospective adopters as well as technical implementers, many of whom are also leading and/or actively involved in other relevant RDA IGs and WGs, whose activities this WG complements and with which this WG will work closely. For more details, please refer to our Case Statement, found in the right-hand column.


    Through the BioSharing WG’s 18 month timeframe, we have built upon the existing BioSharing registry and transformed it into a searchable network of 800+ databases, 650+ data standards, and 80+ journal and funder data policies in the life, biomedical and environmental science domains.

    During this time, the BioSharing portal has been adopted by a number of journal publishers, research data management programmes, community groups and infrastructure, research and funding programmes. These are shown in the table below.



    Adopters

    Please note: We are gaining new adopters all the time. To see the most up-to-date version of this table, please see our communities page.

     

     

    Adopter Type Associated BioSharing Record
    Biotechnology and Biological Sciences Research Council (BBSRC) Resource list -
    BioMedCentral (BMC) Journal Data Policy Recommendation
    EMBO Press Journal Data Policy Recommendation
    Faculty of 1000 (F1000) Journal Data Policy Recommendation
    GigaScience Journal Data Policy Recommendation
    Scientific Data Journal Data Policy Recommendation
    Springer Nature Journal Data Policy -
    Wellcome Open Research Journal Data Policy Recommendation
    ELIXIR Europe$ Infrastructure -
    ELIXIR UK Infrastructure -
    JISC UK Infrastructure -
    Cell Migration Standardisation Organisation (CMSO) Organisation Collection
    Taxonomic Databases Working Group (TDWG)* Organisation Collection
    EMBL-Australia Bioinformatics Resource Organisation Collection
    Clinical Data Interchange Standards Consortium (CDISC) Organisation Collection
    FAIRDOM Project Collection
    Euro-BioImaging$ Project Collection
    IMI eTRIKS Project Collection
    NIH LINCS Project Collection
    University of Cambridge Research Data Management -
    University of Oxford Research Data Management -
    Stanford University Research Data Management -

     

    * TDWG RDA Working Group and Biodiversity Data Integration RDA IG

    $ Part of RDA GEDE Coordination Group

    Want to join our list of adopters? Contact us here.



    Outputs and timeline

     

    Key outputs (March 2017):

     

    1. Growing Adoption - join us!

    Spurred on by our work in the RDA, we have made it clearer who our adopters are. These are now listed in a table on our communities page (https://biosharing.org/communities), and here on the RDA WG page. Our adopters are not individuals, but organizations or projects that in turn serve individual researchers and other stakeholders. To be an adopter, a resource/group/organisation needs to use BioSharing in their work in some way (e.g. to inform their data policy or by creating and linking to a collection), and link back to BioSharing from their webpages. As you can see from the table, BioSharing has a growing diverse list of adopters, but we're always keen to add more, so please do spread the word and let us know if you think we have missed someone off our list.

     

    2. RDA/Force11 BioSharing WG outputs

    The joint RDA/Force11 BioSharing WG is coming to the end of its 18 month time frame, but will remain an activity in the RDA community as part of the RDA ELIXIR Bridging Force Interest Group. We are currently preparing our output package for consideration by the RDA (watch this space!) This is an important step as it will increase the visibility of BioSharing outside of the life/biomedical/environmental science domains and encourage cross-domain and discipline collaborations.

     

    We feature in two sections of the March 2017 RDA newsletter.

     

    3. Content and curation - update

    As of March 1st 2017, we have 674 standards and 841 databases and 94 data policies. Aiming for quality, accuracy and consistency, we have manually reviewed every single record in BioSharing, checking every field and relationship link. This means every record has been manually assessed within the last year. We are now in the process of contacting the maintainers and contacts for each record to ensure they are aware of this update and have added all they can to their record(s).

     

    Key outputs (August 2016):

    BioSharing is now an:

     

    1. Informative resource

    A web-based, searchable portal of 3 interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards (https://biosharing.org/standards), databases (https://biosharing.org/databases) and data policies (https://biosharing.org/policies), also combined in an integrated view across all 3 registries (https://biosharing.org/search)

    Every standard and database record is annotated with a tag indicating the readiness of that resource for implementation or use (status checked with the community). Currently we have 4 indicators, that can be found in the top left of each record card (Grid view) or in the column on the right (Table view): R - ready; Dev - in development; U - status uncertain; D - deprecated. These tags also assist the Educational side, below.

     

    2. Educational resource


    From the homepage user can access the:

    - Educational section. A collection of over 40 frequently asked questions that cover the whats and whys of standards, how BioSharing can help users navigate standards, databases and data policies in the life sciences, and how to use and cite BioSharing: https://biosharing.org/educational

    - Recommendations. Standards and/or databases recommended by journal or funder data policy, e.g. PLOS: https://biosharing.org/recommendation/PLOS

    - Collections. Standards and/or databases grouped by domain, species or organization, e.g. see the Biodiversity Standards, a group linked to the RDA IG: https://biosharing.org/collection/TDWGBiodiversity



    Activities at previous plenaries

    RDA 9th Plenary, 5-7th April, Barcelona (ES)

    Monday 3rd - Tuesday 4th April

    Wednesday 5th April

    Thursday 6th April


    RDA 8th Plenary and IDW, 11-17th September, Denver (USA)

    We co-organized and presented at the following sessions:


    Activities pre-plenary 8

    1. Pre-defined Recommendations: A core-set of resources (databases and/or standards) that have been selected and recommended by relevant groups or organizations. 

    2. Wizard Tool (beta): The wizard guides users step-by-step through the resources captured in BioSharing. 

    3. BioSharing Standards Registry Survey: We have just closed our BioSharing Standards Registry survey, where we have assessed your needs for a registry of data/content standards in the life, environmental and biomedical sciences. We have had over 530 responses. We're now analysing the survey and will shortly publicize an executive summary of the results, along with the raw data.


    Activities at Plenary 7

    Where we presented

    Activities pre-plenary 7

    To prioritize BioSharing registry's content and capabilities, in a way most appropriate to your needs, we have run a 10 questions survey and received 530 replies!

    Here you can see a 3 slides update on our progresses to date.


    Activities at RDA Plenary 6

    Presentations

    Thank-you for your feedback at the 6th Plenary meeting in Paris. It was great to catch up with everyone and to hear about the innovative and challenging work everyone is doing. If you didn’t manage to catch us at the meeting, our slides and our leaflet are available on Slideshare, as follows:

    Where we presented


    Activities pre-RDA plenary 6 

    Help us prioritize improvements to BioSharing's capabilities as a Standards Information Resource, in a way most appropriate to your needs. ​Take a few minutes to answer few questions, please!


    Activities at RDA Plenary 5


    Activities at RDA Plenary 4


    Activities at RDA Plenary 3

     


    Events we have attended and presented at

    ELIXIR All Hands Meeting (Mar 21-23, 2017), Rome (IT)

    BioSchemas and schema.org workshop (Mar 6-8, 2017), Wellcome Genome Campus, Cambridge (UK)

    International Digital Curation Conference - DMP workshop (Feb 2017), Edinburgh, Scotland (UK)

    ELIXIR Interoperability Platform (Jan 2017), Amsterdam (NL)

    NIH BD2K All Hands (Dec 2016), DC (USA)

    NETTAB/CHARME workshop (Oct 25-26, 2016) Rome (IT) - Reproducibility, standards and SOP in bioinformatics - slides here

    ECCB (Sept 6, 2016) The Hague (NL) ELIXIR talk 11 - The BioSharing registry: mapping the landscape of standards and database resources in the life sciences - slides here

    CHARME workshop - (June 22, 2016) Warsaw (PL) - a presentation on BioSharing at the kick-off COST-CHARME workshop on Standards - slides here

    ISB2016 Conference - Geneva (CH) where we presented a poster on the BioSharing database registry (Tuesday 12th April) and ran a workshop on BioSharing, community curation and the BioDBcore guidelines (Wednesday 13th April)

    UKON2016 Conference - Newcastle (UK) for a short talk on BioSharing on Thursday 14th April

    FORCE2016 Conference - Portland (OR) at the Propelled by FORCE session on Tuesday April 19th at 10am

     


    Recent Activity

    22 Nov 2017

    Fwd: 10th International Conference on Ecological Informatics from 24 - 28 September, 2018 in Jena, Germany

    This may be of interest to some of you.
    Best,
    Pete
    FAIRsharing.org
    -----------------------------------------------------------------------------------------------------------------------
    "How can steadily advancing sensor and information technology assist to take advantage of steadily growing and diversifying data in ecology?"

    18 Sep 2017

    “R programming language to manage metadata, data complying with OGC standards and controlled vocabularies: the case of Tuna Fisheries”

    Dear IG's / WG's,

    We would like to invite you to an RDA related event that we believe to be relevant to your activities; “R programming language to manage metadata and data by complying with OGC (EML, CF conventions) standards and controlled vocabularies: the case of Tuna Fisheries” .

    When: Tuesday 19 September 2017, from 11:30 to 13:00 local time

    Where: room: Mansfield 10, RDA Plenary Meeting, Montreal, Canada

    14 Sep 2017

    Where to find us at RDA P10 Montrèal

    Dear BioSharing RDA WG members,
    Suitcase packed. Tickets printed. Ready for Montrèal?
    Here's where you can find discussions and presentations from the
    BioSharing WG at the meeting:
    *Sunday 17th September*
    - 09:00-18:00 Interest Group on Agricultural Data (IGAD) Pre-Plenary
    meeting (Day 1) - talk at 10:15
    *Monday 18th September*
    - 09:00-18:00 Interest Group on Agricultural Data (IGAD) Pre-Plenary
    meeting (Day 2)
    - 14:00-18:00 RDA TAB & WG/IG Chairs meeting
    *Tuesday 19th September*

    11 Jul 2017

    Introducing FAIRsharing!!

    Dear BioSharing WG members,
    There have been a number of changes at BioSharing since our last
    communication. In this short email I'll describe and explain what we've
    been up to.
    First things first, we have rebranded BioSharing.org to FAIRsharing.org!
    FAIRsharing serves the same information on standards, the databases that
    implement them, and the data policies that endorse them, but does so
    across all disciplines, rather than solely the life sciences.
    This is in response to user feedback, suggestions from members of the

    19 Jun 2017

    Potential joint session for P10

    Dear Chairs of the BioSharing WG,
    Following up on the Call for Sessions for the upcoming RDA P10
    (https://www.rd-alliance.org/rda-10th-plenary-call-sessions), I would like
    to initiate a discussion regarding a potential Joint Session between the
    BioSharing WG and the Data Discovery Paradigms IG (DDPIG -
    https://www.rd-alliance.org/groups/data-discovery-paradigms-ig).

    22 May 2017

    FW: [rda-biosharing-wg] RDA Webinar Tuesday 23rd May, 14:00 CEST, 12 UTC - BioSharing WG output and registry

    Hi Landscape Mappers,
    Note the webinar from the BioSharing WG tomorrow discussing their ‘mapping the landscape of data standards’ activity.
    FYI,
    Lynn
    From:
    <***@***.***-groups.org> on behalf of Pete McQuilton
    <***@***.***>
    Date: Monday, May 22, 2017 at 9:32 AM
    To: "***@***.***-groups.org" <***@***.***-groups.org>
    Subject: [rda-biosharing-wg] RDA Webinar Tuesday 23rd May, 14:00 CEST, 12 UTC - BioSharing WG output and registry
    Dear WG members,

    22 May 2017

    RDA Webinar Tuesday 23rd May, 14:00 CEST, 12 UTC - BioSharing WG output and registry

    Dear WG members,
    This is a gentle reminder of our Webinar tomorrow, where we'll discuss
    the BioSharing WG, and our registry mapping the landscape of data
    standards, databases and data policies.
    More information on the webinar and how to watch it can be found here:
    https://www.rd-alliance.org/biosharing-recommendations-data-repositories...
    The
    webinar will also be recorded and made available for viewing at a later

    04 Apr 2017

    BioSharing WG - RDA Recommendation ready for community review

    Dear BioSharing WG members,
    The recommendation from this joint RDA/Force11 WG is available for
    community review/comment here:
    *http://dx.doi.org/10.15497/RDA00017*
    More information on the RDA recommendation process can be found here
    .
    The report and recommendations therein are available for comment over
    the next 4 weeks. We'd like to thank everyone who has been involved in
    this WG to date, in particular those who have adopted BioSharing in

    31 Mar 2017

    BioSharing WG - RDA 9th Plenary Update April 2017

    Dear BioSharing WG members,
    The joint RDA/Force11 BioSharing WG is coming to the end of its 18 month
    time frame, culminating in the upcoming RDA 9th Plenary in Barcelona.
    Here is a list of where the WG will feature (with links to separate
    session pages):
    *Monday 3rd - Tuesday 4th April*
    Interest Group on Agricultural Data (IGAD) Pre-RDA meeting

    EUDAT Semantic Working Group Workshop

    *Wednesday 5th April*
    11:30-13:00 Breakout 1 - What's Happened in the Life Sciences - joint
    BioSharing WG & ELIXIR Bridging Force IG